I'm sure this problem is answered in many, many places. Here is my little collection of links that discuss how SQL Server Merge Replication behaves over a bad communications line. Of particular interest is the use of Logical Records, which will soon be deprecated it seems.
Frequently Asked Questions for Replication Adminstrators: http://msdn.microsoft.com/en-us/library/ms151740.aspx
Grouping Changes to Related Rows With Logical Records: http://msdn.microsoft.com/en-us/library/ms152507.aspx
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